JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FANCA_chr16_89732549_89821647	0/1	t0001	1084	192	51	29	88	4	19	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	1/0	t0002	1085	81	16	37	3	9	15	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0003	1084	15	0	0	14	1	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0004	1084	10	9	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0005	1084	7	0	0	0	0	7	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0006	1084	6	6	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0007	1084	5	5	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0008	1084	5	0	0	5	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0009	1084	3	2	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0010	1084	3	0	0	0	0	3	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0011	1084	2	1	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0012	1084	1	0	1	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0013	1085	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0014	1084	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0015	1084	1	1	0	0	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCA_chr16_89732549_89821647	0/0	t0016	1084	1	0	0	1	0	0	copy fasta	FANCA	chr16	89732549	89821647
FANCB_chrX_14838405_14878069	0/1	t0001	438	131	53	29	30	7	11	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	1/0	t0002	438	128	13	22	73	2	17	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	t0003	438	5	4	1	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	t0004	438	4	2	2	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	t0005	438	3	3	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	t0006	438	2	2	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCB_chrX_14838405_14878069	0/0	t0007	438	1	1	0	0	0	0	copy fasta	FANCB	chrX	14838405	14878069
FANCC_chr9_95094054_95322709	1/0	t0001	2916	122	14	35	44	6	22	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/1	t0002	2916	78	9	13	39	4	12	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0003	2916	23	22	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0004	2875	8	8	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0005	2912	8	0	0	7	0	1	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0006	2916	4	4	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0007	2916	3	2	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0008	2877	2	2	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0009	2916	2	0	0	2	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0010	2916	2	0	0	0	2	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0011	2916	2	2	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0012	2912	2	0	0	2	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0013	2912	2	1	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0014	2912	1	0	0	1	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0015	2881	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0016	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0017	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0018	2877	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0019	2916	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0020	2916	1	0	0	1	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0021	2916	1	0	0	1	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0022	2916	1	0	0	0	0	1	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0023	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0024	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0025	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0026	2916	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0027	2877	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709