JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FANCC_chr9_95094054_95322709	0/0	t0028	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0029	2910	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0030	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0031	2916	1	1	0	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0032	2916	1	0	0	1	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCC_chr9_95094054_95322709	0/0	t0033	2916	1	0	1	0	0	0	copy fasta	FANCC	chr9	95094054	95322709
FANCD2OS_chr3_10098937_10113255	1/1	t0001	554	239	44	45	103	13	32	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0002	528	65	29	16	12	3	5	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0003	554	13	1	2	6	0	4	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0004	554	9	9	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0005	553	8	0	0	8	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0006	554	5	5	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0007	528	4	3	1	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0008	554	1	0	0	0	0	1	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0009	568	1	0	0	1	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2OS_chr3_10098937_10113255	0/0	t0010	554	1	1	0	0	0	0	copy fasta	FANCD2OS	chr3	10098937	10113255
FANCD2_chr3_10021437_10106932	1/0	t0001	741	77	9	21	26	4	16	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0002	741	54	36	14	2	0	2	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0003	740	41	33	3	4	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/1	t0004	741	32	1	11	8	3	8	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0005	742	12	0	3	7	0	2	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0006	740	6	4	1	0	1	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0007	742	5	0	1	3	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0008	741	3	0	0	3	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0009	741	2	0	0	2	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0010	741	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0011	742	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0012	740	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0013	741	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0014	741	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0015	741	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0016	741	1	0	0	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0017	742	1	0	0	0	0	1	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0018	742	1	0	0	1	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCD2_chr3_10021437_10106932	0/0	t0019	742	1	1	0	0	0	0	copy fasta	FANCD2	chr3	10021437	10106932
FANCE_chr6_35447338_35472102	1/1	t0001	966	310	50	59	154	10	35	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0002	965	53	21	3	18	2	9	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0003	966	23	2	5	16	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0004	966	11	10	1	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0005	966	3	3	0	0	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0006	966	1	0	0	1	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCE_chr6_35447338_35472102	0/0	t0007	966	1	0	0	1	0	0	copy fasta	FANCE	chr6	35447338	35472102
FANCF_chr11_22617533_22630823	0/1	t0001	2168	213	22	40	118	3	29	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0002	2168	82	40	23	13	3	3	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0003	2168	50	3	4	36	5	2	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0004	2168	20	1	4	15	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0005	2168	14	0	0	10	0	4	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0006	2168	8	8	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0007	2168	4	3	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0008	2168	4	4	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823