JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FANCF_chr11_22617533_22630823	0/0	t0009	2168	4	4	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0010	2167	3	3	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0011	2168	2	1	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	1/0	t0012	2167	2	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0013	2168	2	1	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0014	2168	1	0	0	1	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0015	2168	1	0	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0016	2168	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0017	2168	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0018	2142	1	0	0	1	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0019	2168	1	0	0	1	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0020	2168	1	0	1	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0021	2168	1	0	0	1	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0022	2168	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0023	2168	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0024	2168	1	1	0	0	0	0	copy fasta	FANCF	chr11	22617533	22630823
FANCF_chr11_22617533_22630823	0/0	t0025	2168	1	0	0	0	1	0	copy fasta	FANCF	chr11	22617533	22630823
FANCG_chr9_35068839_35084942	1/1	t0001	688	327	87	61	118	16	43	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	t0002	688	96	10	9	73	0	4	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	t0003	688	1	1	0	0	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	t0004	688	1	0	0	0	0	1	copy fasta	FANCG	chr9	35068839	35084942
FANCG_chr9_35068839_35084942	0/0	t0005	688	1	0	0	1	0	0	copy fasta	FANCG	chr9	35068839	35084942
FANCI_chr15_89238979_89322131	1/1	t0001	747	184	26	32	91	12	21	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0002	748	94	8	17	56	2	11	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0003	747	41	36	5	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0004	747	9	7	0	1	1	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0005	748	6	3	2	0	1	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0006	747	4	4	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0007	747	3	3	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0008	747	2	2	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0009	747	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0010	747	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCI_chr15_89238979_89322131	0/0	t0011	747	1	1	0	0	0	0	copy fasta	FANCI	chr15	89238979	89322131
FANCL_chr2_58154247_58246325	1/1	t0001	531	383	84	67	182	12	36	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	t0002	531	3	0	3	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	t0003	531	3	3	0	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCL_chr2_58154247_58246325	0/0	t0004	531	1	1	0	0	0	0	copy fasta	FANCL	chr2	58154247	58246325
FANCM_chr14_45130930_45205890	1/1	t0001	985	196	47	35	76	10	26	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0002	985	26	25	1	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0003	986	6	6	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0004	987	5	5	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0005	985	2	2	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0006	969	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0007	987	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANCM_chr14_45130930_45205890	0/0	t0008	985	1	1	0	0	0	0	copy fasta	FANCM	chr14	45130930	45205890
FANK1_chr10_125891564_126014592	1/1	t0001	234	353	70	59	170	10	42	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	t0002	234	13	10	3	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FANK1_chr10_125891564_126014592	0/0	t0003	234	4	4	0	0	0	0	copy fasta	FANK1	chr10	125891564	126014592
FAP_chr2_162165684_162248445	1/1	t0001	414	229	69	50	82	8	18	copy fasta	FAP	chr2	162165684	162248445
FAP_chr2_162165684_162248445	0/0	t0002	414	3	3	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445