JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAP_chr2_162165684_162248445	0/0	t0003	414	2	2	0	0	0	0	copy fasta	FAP	chr2	162165684	162248445
FAR1_chr11_13663668_13737346	1/0	t0001	3719	96	14	16	51	4	10	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/1	t0002	3719	86	12	10	49	4	10	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0003	3718	84	28	16	26	5	9	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0004	3714	31	4	7	8	2	10	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0005	3713	9	8	0	0	0	1	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0006	3717	5	5	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0007	3718	4	4	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0008	3713	4	2	2	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0009	3721	3	2	0	0	1	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0010	3714	3	0	1	0	0	2	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0011	3713	3	3	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0012	3718	3	0	0	3	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0013	3718	2	2	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0014	3719	2	2	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0015	3718	2	2	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0016	3719	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0017	3718	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0018	3714	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0019	3719	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0020	3719	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0021	3719	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0022	3717	1	0	0	1	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0023	3719	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0024	3718	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0025	3718	1	0	0	0	0	1	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0026	3718	1	1	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0027	3718	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0028	3717	1	1	0	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0029	3719	1	0	1	0	0	0	copy fasta	FAR1	chr11	13663668	13737346
FAR1_chr11_13663668_13737346	0/0	t0030	3719	1	0	0	0	0	1	copy fasta	FAR1	chr11	13663668	13737346
FAR2_chr12_29144278_29340616	0/0	t0001	1991	137	16	27	75	4	15	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	1/1	t0002	1991	129	50	23	36	3	15	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0003	1991	22	2	1	15	0	4	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0004	1991	14	0	0	12	0	2	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0005	1991	6	6	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0006	1991	4	0	4	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0007	1991	2	2	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0008	1991	2	0	2	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0009	1991	2	2	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0010	1991	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0011	1991	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0012	1991	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0013	1991	1	0	0	0	1	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0014	1991	1	0	0	1	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0015	1991	1	1	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0016	1991	1	1	0	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FAR2_chr12_29144278_29340616	0/0	t0017	1991	1	0	1	0	0	0	copy fasta	FAR2	chr12	29144278	29340616
FARP1_chr13_98138094_98460176	0/0	t0001	7282	26	5	8	8	1	4	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0002	7278	15	1	4	7	0	3	copy fasta	FARP1	chr13	98138094	98460176