JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FARP1_chr13_98138094_98460176	1/0	t0003	7282	14	5	1	2	1	4	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0004	7283	12	2	3	2	0	5	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0005	7283	12	1	1	5	1	4	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0006	7268	11	1	3	4	2	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0007	7278	8	1	1	4	0	2	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0008	7264	7	0	2	1	2	2	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0009	7269	6	5	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0010	7282	4	4	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0011	7279	4	1	3	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0012	7268	4	0	2	0	0	2	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0013	7282	4	4	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0014	7283	4	0	0	4	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0015	7282	3	3	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0016	7279	3	1	2	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0017	7269	3	2	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0018	7278	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0019	7283	2	0	0	2	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0020	7283	2	0	0	0	0	2	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0021	7278	2	1	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0022	7278	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/1	t0023	7287	2	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0024	7282	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0025	7280	2	0	0	2	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0026	7278	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0027	7268	2	2	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0028	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0029	7283	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0030	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0031	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0032	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0033	7276	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0034	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0035	7283	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0036	7278	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0037	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0038	7269	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0039	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0040	7269	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0041	7264	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0042	7278	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0043	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0044	7279	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0045	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0046	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0047	7278	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0048	7279	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0049	7268	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0050	7268	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0051	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0052	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176