JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FARP1_chr13_98138094_98460176	0/0	t0053	7269	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0054	7278	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0055	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0056	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0057	7279	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0058	7278	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0059	7282	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0060	7269	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0061	7276	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0062	7278	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0063	7278	1	0	0	0	1	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0064	7283	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0065	7279	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0066	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0067	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0068	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0069	7269	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0070	7269	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0071	7264	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0072	7268	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0073	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0074	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0075	7278	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0076	7268	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0077	7268	1	0	0	0	0	1	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0078	7268	1	1	0	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0079	7282	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0080	7283	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0081	7268	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0082	7282	1	0	1	0	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0083	7279	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0084	7264	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP1_chr13_98138094_98460176	0/0	t0085	7283	1	0	0	1	0	0	copy fasta	FARP1	chr13	98138094	98460176
FARP2_chr2_241351285_241499841	1/1	t0001	845	365	80	66	162	11	44	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0002	845	5	4	1	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0003	845	2	0	1	0	1	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0004	845	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0005	845	1	0	1	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0006	845	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0007	845	1	0	0	1	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0008	845	1	0	1	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARP2_chr2_241351285_241499841	0/0	t0009	845	1	1	0	0	0	0	copy fasta	FARP2	chr2	241351285	241499841
FARS2_chr6_5256513_5776583	1/1	t0001	324	92	26	21	24	4	15	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	t0002	324	70	45	13	8	2	2	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	t0003	325	5	5	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	t0004	324	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	t0005	324	1	0	0	0	0	1	copy fasta	FARS2	chr6	5256513	5776583
FARS2_chr6_5256513_5776583	0/0	t0006	325	1	1	0	0	0	0	copy fasta	FARS2	chr6	5256513	5776583
FARSA_chr19_12917479_12938711	1/1	t0001	285	336	89	73	126	16	30	copy fasta	FARSA	chr19	12917479	12938711
FARSA_chr19_12917479_12938711	0/0	t0002	285	10	7	3	0	0	0	copy fasta	FARSA	chr19	12917479	12938711