Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK6_chr5_69345984_69374520	0/0	t0002	1101	9	9	0	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0003	1108	8	7	1	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0004	1108	6	1	0	0	0	5	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0005	1108	2	2	0	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0006	1108	2	2	0	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0007	1108	1	0	0	0	0	1	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0008	1108	1	0	0	1	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0009	1108	1	0	0	1	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0010	1108	1	0	0	1	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	t0011	1108	1	1	0	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK7_chr14_96387128_96494427	0/1	t0001	1111	196	40	49	72	9	25	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	1/0	t0002	1112	84	31	9	23	7	13	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0003	1112	14	0	1	9	0	4	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0004	1110	6	2	1	3	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0005	1112	5	4	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0006	1112	4	4	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0007	1109	3	2	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0008	1112	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0009	1111	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0010	1111	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	t0011	1112	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK8_chr9_132720578_132883284	1/1	t0001	140	254	76	48	94	8	26	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	t0002	140	12	12	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK9_chr6_109487855_109696202	1/1	t0001	582	226	66	40	87	9	22	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	t0002	582	133	20	25	69	5	14	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	t0003	582	16	3	5	4	2	2	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	t0004	582	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AKAIN1_chr18_5137911_5202257	0/0	t0001	2856	104	1	17	66	4	16	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/1	t0002	2856	92	6	12	63	1	9	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	1/0	t0003	2856	49	3	13	22	3	7	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0004	2856	27	19	1	7	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0005	2856	23	3	9	6	2	3	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0006	2856	15	12	3	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0007	2856	11	0	1	6	2	2	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0008	2856	11	2	1	8	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0009	2856	10	1	8	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0010	2856	9	9	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0011	2856	9	0	5	1	1	2	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0012	2856	5	5	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0013	2856	5	5	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0014	2856	4	4	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0015	2856	4	0	0	4	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0016	2856	4	3	0	0	1	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0017	2856	3	3	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0018	2856	2	2	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0019	2856	2	1	1	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0020	2856	2	2	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0021	2856	2	0	0	2	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0022	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0023	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257