JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FARSB_chr2_222561899_222661092	0/0	t0001	4992	84	9	13	49	3	10	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0002	4992	76	0	10	56	1	9	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/1	t0003	5000	57	8	13	20	4	11	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	1/0	t0004	4992	36	18	8	4	0	5	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0005	4991	15	10	2	2	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0006	4992	14	14	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0007	4992	8	0	4	0	1	3	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0008	5001	7	6	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0009	4991	5	5	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0010	4991	4	3	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0011	4992	4	3	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0012	5000	3	3	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0013	5001	2	0	0	0	2	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0014	5001	2	2	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0015	5000	2	0	2	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0016	4992	2	2	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0017	4993	2	0	0	1	1	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0018	4992	2	0	0	0	0	2	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0019	4992	2	0	0	2	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0020	4992	2	0	0	2	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0021	5000	1	0	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0022	5000	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0023	5000	1	0	0	0	0	1	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0024	4992	1	1	0	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0025	4992	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0026	4992	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0027	4991	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0028	4992	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0029	4992	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0030	4992	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0031	4992	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0032	4992	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0033	4992	1	0	0	1	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0034	4992	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FARSB_chr2_222561899_222661092	0/0	t0035	4993	1	0	1	0	0	0	copy fasta	FARSB	chr2	222561899	222661092
FASLG_chr1_172654103_172671876	1/1	t0001	960	300	36	47	169	12	34	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0002	962	81	34	25	10	4	8	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0003	954	20	17	3	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0004	958	9	7	1	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0005	964	7	3	1	3	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0006	958	3	2	1	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0007	960	1	0	0	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0008	960	1	0	0	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0009	960	1	1	0	0	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0010	960	1	0	0	1	0	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0011	960	1	0	0	0	1	0	copy fasta	FASLG	chr1	172654103	172671876
FASLG_chr1_172654103_172671876	0/0	t0012	960	1	0	0	0	1	0	copy fasta	FASLG	chr1	172654103	172671876
FASN_chr17_82073338_82103236	0/1	t0001	929	169	39	47	55	10	17	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	1/0	t0002	929	166	35	18	90	4	18	copy fasta	FASN	chr17	82073338	82103236
FASN_chr17_82073338_82103236	0/0	t0003	929	40	10	12	10	0	8	copy fasta	FASN	chr17	82073338	82103236