JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAS_chr10_88985798_89022059	0/0	t0007	2689	7	0	4	0	2	1	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0008	2689	7	7	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0009	2689	5	0	0	5	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0010	2689	5	0	2	3	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0011	2689	3	3	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0012	2689	2	0	2	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0013	2689	2	0	0	2	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0014	2689	2	2	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0015	2689	2	2	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0016	2689	2	1	0	0	1	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0017	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0018	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0019	2689	1	0	1	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0020	2689	1	0	0	1	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0021	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0022	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0023	2689	1	0	0	1	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0024	2689	1	0	0	0	0	1	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0025	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0026	2689	1	0	0	1	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0027	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0028	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0029	2689	1	0	1	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0030	2689	1	0	0	1	0	0	copy fasta	FAS	chr10	88985798	89022059
FAS_chr10_88985798_89022059	0/0	t0031	2689	1	1	0	0	0	0	copy fasta	FAS	chr10	88985798	89022059
FAT1_chr4_186582794_186728856	0/0	t0001	1009	62	5	17	31	4	5	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	1/1	t0002	1010	48	0	13	21	5	7	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0003	1009	23	11	6	3	0	3	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0004	1009	22	1	5	14	1	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0005	1010	17	3	7	6	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0006	1009	15	15	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0007	1022	15	5	0	9	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0008	1009	11	0	4	7	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0009	1023	11	0	0	8	0	3	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0010	1009	10	2	1	2	3	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0011	1010	9	7	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0012	1010	9	0	1	8	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0013	1022	6	1	0	3	0	2	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0014	1008	4	2	1	0	1	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0015	1011	4	3	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0016	1009	4	0	2	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0017	1011	3	2	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0018	1005	3	0	2	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0019	1011	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0020	1009	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0021	1023	3	0	0	3	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0022	1008	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0023	1009	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0024	1009	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0025	1009	2	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856