JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAT1_chr4_186582794_186728856	0/0	t0026	1009	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0027	1005	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0028	1009	2	0	2	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0029	1009	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0030	1009	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0031	1010	2	2	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0032	1009	2	0	0	1	0	1	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0033	1022	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0034	1022	2	0	0	2	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0035	1024	2	1	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0036	1009	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0037	1008	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0038	1008	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0039	1009	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0040	1010	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0041	1008	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0042	1008	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0043	1010	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0044	1010	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0045	1010	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0046	1009	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0047	1009	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0048	1010	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0049	1009	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0050	1009	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0051	1011	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0052	1010	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0053	1023	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0054	1022	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0055	1022	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0056	1022	1	0	1	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0057	1022	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0058	1018	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0059	1024	1	0	0	1	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT1_chr4_186582794_186728856	0/0	t0060	1048	1	1	0	0	0	0	copy fasta	FAT1	chr4	186582794	186728856
FAT2_chr5_151499092_151596331	1/0	t0001	1661	228	45	47	109	8	18	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0002	1661	51	5	5	32	2	7	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0003	1662	18	0	0	18	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0004	1662	14	1	5	0	3	5	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0005	1661	12	11	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0006	1662	11	0	0	10	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0007	1661	9	9	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0008	1661	7	0	0	7	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0009	1661	6	5	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0010	1665	6	6	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0011	1662	6	0	3	1	1	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0012	1661	2	0	0	2	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0013	1661	2	2	0	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0014	1661	2	0	2	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/1	t0015	1661	2	0	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331