JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
FAT2_chr5_151499092_151596331	0/0	t0016	1619	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0017	1665	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0018	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0019	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0020	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0021	1661	1	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0022	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0023	1661	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0024	1661	1	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0025	1662	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0026	1661	1	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0027	1661	1	0	1	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0028	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0029	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0030	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0031	1661	1	0	0	0	1	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0032	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0033	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0034	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0035	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0036	1661	1	0	0	1	0	copy fasta	FAT2	chr5	151499092	151596331
FAT2_chr5_151499092_151596331	0/0	t0037	1661	1	1	0	0	0	copy fasta	FAT2	chr5	151499092	151596331
FAT3_chr11_92219818_92901473	0/0	t0001	5735	7	0	2	0	5	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0002	5735	5	4	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0003	5735	5	0	1	2	2	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0004	5737	5	1	1	3	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0005	5739	3	2	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0006	5736	3	3	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0007	5734	2	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0008	5736	2	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0009	5737	2	2	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0010	5737	2	2	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0011	5737	2	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/1	t0012	5739	2	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0013	5754	2	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0014	5739	2	2	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0015	5737	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0016	5739	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0017	5739	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0018	5737	1	0	0	1	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0019	5735	1	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0020	5736	1	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0021	5734	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0022	5736	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0023	5738	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0024	5738	1	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0025	5738	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0026	5734	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0027	5737	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0028	5735	1	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473