JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	tseq	genename	chr	start	end
FAT3_chr11_92219818_92901473	0/0	t0029	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0030	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0031	5737	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0032	5739	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0033	5752	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0034	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0035	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0036	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0037	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0038	5752	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0039	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0040	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0041	5736	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0042	5736	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0043	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0044	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0045	5736	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0046	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0047	5753	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0048	5737	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0049	5739	1	0	1	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0050	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0051	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0052	5737	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0053	5739	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0054	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0055	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0056	5739	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0057	5737	1	0	1	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0058	5741	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0059	5754	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0060	5739	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0061	5741	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0062	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0063	5735	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0064	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0065	5737	1	0	1	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0066	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0067	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0068	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0069	5734	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0070	5736	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0071	5735	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0072	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0073	5737	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	1/0	t0074	5735	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0075	5750	1	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0076	5737	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0077	5735	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0078	5737	1	0	0	1	copy fasta	FAT3	chr11	92219818	92901473