JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAT3_chr11_92219818_92901473	0/0	t0079	5739	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0080	5737	1	0	0	0	0	1	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0081	5739	1	0	0	1	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0082	5754	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0083	5737	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0084	5739	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0085	5739	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0086	5739	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0087	5734	1	0	1	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT3_chr11_92219818_92901473	0/0	t0088	5752	1	1	0	0	0	0	copy fasta	FAT3	chr11	92219818	92901473
FAT4_chr4_125309955_125497932	0/1	t0001	2200	159	25	33	73	6	21	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0002	2200	97	39	16	27	5	10	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0003	2200	24	5	13	0	3	3	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0004	2200	15	0	0	13	0	2	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	1/0	t0005	2200	6	5	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0006	2200	4	4	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0007	2200	3	0	0	3	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0008	2200	3	1	2	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0009	2200	2	0	1	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0010	2200	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0011	2200	1	1	0	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0012	2200	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0013	2200	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0014	2200	1	0	0	1	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0015	2200	1	0	1	0	0	0	copy fasta	FAT4	chr4	125309955	125497932
FAT4_chr4_125309955_125497932	0/0	t0016	2200	1	0	0	0	0	1	copy fasta	FAT4	chr4	125309955	125497932
FATE1_chrX_151711035_151728194	1/1	t0001	521	233	42	49	107	9	24	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0002	521	98	29	13	49	2	5	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0003	521	4	4	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0004	521	2	2	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0005	521	2	2	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0006	521	1	1	0	0	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0007	523	1	0	0	1	0	0	copy fasta	FATE1	chrX	151711035	151728194
FATE1_chrX_151711035_151728194	0/0	t0008	521	1	0	0	0	0	1	copy fasta	FATE1	chrX	151711035	151728194
FAU_chr11_65115630_65127134	1/1	t0001	105	392	92	70	170	16	42	copy fasta	FAU	chr11	65115630	65127134
FAXC_chr6_99266168_99354674	0/0	t0001	10279	27	0	10	14	1	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0002	10302	26	0	6	18	0	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	1/0	t0003	10299	20	1	15	0	1	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0004	10279	14	0	11	3	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0005	10292	11	3	2	2	3	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0006	10304	11	0	4	7	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0007	10309	10	0	0	10	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0008	10308	8	0	0	8	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0009	10306	8	0	1	4	0	3	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0010	10306	7	0	0	7	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0011	10316	7	0	0	5	0	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0012	10293	7	4	3	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0013	10284	7	7	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0014	10298	6	1	0	4	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0015	10307	6	0	0	5	0	1	copy fasta	FAXC	chr6	99266168	99354674