JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAXC_chr6_99266168_99354674	0/0	t0016	10304	5	0	0	5	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0017	10279	5	0	0	5	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0018	10309	5	0	0	5	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/1	t0019	10293	5	0	2	0	1	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0020	10310	5	0	0	5	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0021	10288	5	1	2	0	2	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0022	10311	5	1	0	3	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0023	10305	5	0	0	5	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0024	10294	4	2	1	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0025	10295	4	0	0	1	0	3	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0026	10290	4	0	1	0	2	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0027	10300	4	0	1	1	0	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0028	10295	3	3	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0029	10291	3	1	1	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0030	10293	3	0	0	1	0	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0031	10318	3	0	0	3	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0032	10312	3	1	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0033	10306	3	0	0	3	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0034	10289	3	3	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0035	10300	3	3	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0036	10296	3	0	0	2	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0037	10292	3	3	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0038	10290	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0039	10313	2	0	0	0	0	2	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0040	10311	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0041	10292	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0042	10305	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0043	10299	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0044	10297	2	1	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0045	10282	2	0	1	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0046	10306	2	0	2	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0047	10314	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0048	10304	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0049	10311	2	0	0	2	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0050	10300	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0051	10292	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0052	10289	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0053	10287	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0054	10288	2	0	2	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0055	10308	2	0	0	1	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0056	10304	2	2	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0057	10302	2	0	2	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0058	10313	2	1	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0059	10308	2	1	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0060	10312	2	1	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0061	10306	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0062	10304	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0063	10287	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0064	10310	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0065	10279	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674