Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAIN1_chr18_5137911_5202257	0/0	t0024	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0025	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0026	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0027	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0028	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0029	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0030	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0031	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0032	2856	1	0	0	0	0	1	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0033	2856	1	0	0	0	0	1	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0034	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0035	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0036	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0037	2856	1	0	1	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0038	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0039	2856	1	0	0	0	1	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0040	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0041	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0042	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0043	2856	1	1	0	0	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0044	2856	1	0	0	0	0	1	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0045	2868	1	0	0	0	1	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0046	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0047	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAIN1_chr18_5137911_5202257	0/0	t0048	2856	1	0	0	1	0	0	copy fasta	AKAIN1	chr18	5137911	5202257
AKAP10_chr17_19899302_19982828	0/1	t0001	2075	104	22	23	37	8	13	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	1/0	t0002	2075	56	8	19	22	2	4	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0003	2073	43	8	14	3	6	12	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0004	2076	16	15	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0005	2075	11	0	0	11	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0006	2073	9	9	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0007	2074	5	4	1	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0008	2075	5	0	0	5	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0009	2074	3	3	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0010	2075	2	0	0	1	0	1	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0011	2074	2	1	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0012	2075	2	2	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0013	2073	2	2	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0014	2075	2	1	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0015	2071	2	0	0	2	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0016	2075	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0017	2073	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0018	2075	1	0	1	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0019	2075	1	0	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0020	2073	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0021	2075	1	0	1	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0022	2075	1	0	0	1	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0023	2076	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0024	2072	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828
AKAP10_chr17_19899302_19982828	0/0	t0025	2073	1	1	0	0	0	0	copy fasta	AKAP10	chr17	19899302	19982828