JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAXC_chr6_99266168_99354674	0/0	t0066	10279	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0067	10315	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0068	10311	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0069	10305	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0070	10306	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0071	10292	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0072	10309	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0073	10296	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0074	10290	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0075	10294	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0076	10297	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0077	10295	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0078	10309	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0079	10307	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0080	10305	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0081	10305	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0082	10303	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0083	10292	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0084	10308	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0085	10312	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0086	10306	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0087	10310	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0088	10308	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0089	10302	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0090	10308	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0091	10298	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0092	10308	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0093	10304	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0094	10300	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0095	10298	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0096	10315	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0097	10315	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0098	10310	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0099	10313	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0100	10306	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0101	10314	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0102	10309	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0103	10302	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0104	10305	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0105	10303	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0106	10293	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0107	10272	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0108	10302	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0109	10298	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0110	10314	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0111	10284	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0112	10292	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0113	10292	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0114	10288	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0115	10288	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674