JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAXC_chr6_99266168_99354674	0/0	t0116	10300	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0117	10292	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0118	10291	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0119	10288	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0120	10292	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0121	10279	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0122	10302	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0123	10307	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0124	10305	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0125	10310	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0126	10302	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0127	10302	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0128	10298	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0129	10294	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0130	10302	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0131	10296	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0132	10304	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0133	10297	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0134	10284	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0135	10294	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0136	10279	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0137	10290	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0138	10307	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0139	10302	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0140	10315	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0141	10313	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0142	10303	1	0	0	0	1	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0143	10301	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0144	10297	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0145	10305	1	0	1	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0146	10300	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0147	10297	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0148	10309	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0149	10311	1	0	0	0	0	1	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0150	10306	1	0	0	1	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXC_chr6_99266168_99354674	0/0	t0151	10315	1	1	0	0	0	0	copy fasta	FAXC	chr6	99266168	99354674
FAXDC2_chr5_154813492_154855603	1/1	t0001	1946	196	56	46	55	12	25	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0002	1946	68	26	13	21	2	6	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0003	1946	10	0	1	6	0	3	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0004	1946	6	6	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0005	1946	6	6	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0006	1946	5	0	2	0	1	2	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0007	1949	3	0	0	3	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0008	1946	2	0	2	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0009	1946	2	2	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0010	1946	2	0	2	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0011	1946	2	2	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0012	1946	1	0	0	0	1	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0013	1949	1	0	0	1	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0014	1946	1	0	0	1	0	0	copy fasta	FAXDC2	chr5	154813492	154855603