JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAXDC2_chr5_154813492_154855603	0/0	t0015	1946	1	0	0	1	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0016	1946	1	0	0	1	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0017	1946	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0018	1946	1	1	0	0	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FAXDC2_chr5_154813492_154855603	0/0	t0019	1946	1	0	0	1	0	0	copy fasta	FAXDC2	chr5	154813492	154855603
FBF1_chr17_75904574_75946042	1/1	t0001	1428	227	62	40	92	9	22	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0002	1428	52	26	8	12	0	6	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0003	1428	23	0	3	14	3	3	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0004	1428	6	3	2	0	0	1	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0005	1428	3	3	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0006	1428	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0007	1428	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0008	1428	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0009	1428	1	0	1	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0010	1428	1	0	0	1	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0011	1428	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBF1_chr17_75904574_75946042	0/0	t0012	1428	1	1	0	0	0	0	copy fasta	FBF1	chr17	75904574	75946042
FBH1_chr10_5885243_5942593	0/1	t0001	416	230	50	46	99	10	24	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	1/0	t0002	417	62	11	5	30	1	14	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0003	415	37	17	9	6	3	2	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0004	416	9	5	0	4	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0005	417	2	0	0	2	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0006	417	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0007	417	1	0	0	1	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0008	417	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBH1_chr10_5885243_5942593	0/0	t0009	417	1	1	0	0	0	0	copy fasta	FBH1	chr10	5885243	5942593
FBLIM1_chr1_15753795_15791589	0/0	t0001	2198	136	25	23	64	4	20	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0002	2193	62	4	16	29	3	10	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/1	t0003	2198	35	0	13	5	3	13	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0004	2198	31	24	7	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0005	2193	19	0	0	19	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0006	2197	12	0	8	0	4	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0007	2193	12	12	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0008	2198	7	5	1	1	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0009	2198	5	5	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0010	2198	4	4	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0011	2193	3	0	0	3	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0012	2198	2	0	0	1	1	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	1/0	t0013	2193	2	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0014	2198	2	1	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0015	2198	2	2	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0016	2197	2	0	0	0	0	2	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0017	2193	2	0	0	2	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0018	2198	2	1	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0019	2198	1	0	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0020	1892	1	0	0	1	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0021	2198	1	0	0	0	1	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0022	2198	1	0	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0023	2198	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0024	2198	1	0	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589