JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBLIM1_chr1_15753795_15791589	0/0	t0025	2198	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0026	2198	1	0	0	1	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0027	2198	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0028	2197	1	0	0	0	0	1	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0029	2198	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0030	2193	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0031	2193	1	1	0	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLIM1_chr1_15753795_15791589	0/0	t0032	2198	1	0	1	0	0	0	copy fasta	FBLIM1	chr1	15753795	15791589
FBLL1_chr5_168524305_168535634	0/0	t0001	326	156	19	18	108	1	10	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0002	326	144	38	22	58	8	18	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	1/1	t0003	326	108	36	19	29	6	16	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0004	326	40	3	9	25	1	2	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0005	326	9	0	9	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0006	326	1	1	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0007	326	1	1	0	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLL1_chr5_168524305_168535634	0/0	t0008	326	1	0	1	0	0	0	copy fasta	FBLL1	chr5	168524305	168535634
FBLN1_chr22_45497883_45606135	1/1	t0001	793	282	54	55	120	10	41	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0002	793	25	17	3	2	0	3	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0003	792	12	9	0	1	2	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0004	793	6	6	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0005	793	5	0	0	5	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0006	793	4	4	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0007	793	3	3	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0008	793	2	0	2	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0009	792	2	2	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0010	793	2	0	2	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0011	793	2	0	0	0	0	2	copy fasta	FBLN1	chr22	45497883	45606135
FBLN1_chr22_45497883_45606135	0/0	t0012	793	1	1	0	0	0	0	copy fasta	FBLN1	chr22	45497883	45606135
FBLN2_chr3_13544125_13643404	0/0	t0001	611	118	31	17	63	3	4	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/1	t0002	609	55	10	13	24	1	6	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	1/0	t0003	611	32	1	13	11	2	4	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0004	611	31	18	4	8	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0005	610	17	6	2	8	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0006	611	12	1	1	5	0	5	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0007	609	9	1	3	1	2	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0008	609	8	3	0	1	0	4	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0009	610	7	6	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0010	609	5	4	1	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0011	610	4	4	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0012	610	3	3	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0013	609	2	0	0	0	0	2	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0014	610	2	0	2	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0015	609	2	2	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0016	611	1	0	0	1	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0017	609	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0018	609	1	1	0	0	0	0	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0019	611	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN2_chr3_13544125_13643404	0/0	t0020	610	1	0	0	0	0	1	copy fasta	FBLN2	chr3	13544125	13643404
FBLN5_chr14_91864411_91952694	1/1	t0001	1279	202	60	53	61	12	14	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0002	1279	93	20	8	46	4	15	copy fasta	FBLN5	chr14	91864411	91952694