JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBLN5_chr14_91864411_91952694	0/0	t0003	1278	24	0	0	19	0	5	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0004	1279	9	8	1	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0005	1279	5	3	0	1	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0006	1279	5	0	2	2	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0007	1279	5	1	0	3	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0008	1279	3	0	0	3	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0009	1279	2	2	0	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0010	1279	1	0	0	1	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0011	1278	1	0	0	1	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0012	1279	1	0	0	1	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0013	1279	1	0	1	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0014	1279	1	1	0	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0015	1279	1	0	1	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0016	1279	1	1	0	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0017	1279	1	1	0	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0018	1279	1	0	0	0	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0019	1279	1	1	0	0	0	0	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0020	1279	1	0	0	0	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN5_chr14_91864411_91952694	0/0	t0021	1279	1	0	0	0	0	1	copy fasta	FBLN5	chr14	91864411	91952694
FBLN7_chr2_112133385_112193218	0/1	t0001	984	268	54	60	118	10	25	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0002	984	25	10	6	2	4	3	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	1/0	t0003	984	23	17	1	0	1	3	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0004	984	9	0	3	5	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0005	983	6	5	1	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0006	984	6	0	1	0	2	3	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0007	984	2	0	0	0	0	2	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0008	984	2	2	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0009	984	1	0	0	0	0	1	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0010	984	1	0	0	0	1	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0011	984	1	0	0	1	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0012	984	1	1	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBLN7_chr2_112133385_112193218	0/0	t0013	984	1	1	0	0	0	0	copy fasta	FBLN7	chr2	112133385	112193218
FBL_chr19_39829458_39851379	1/1	t0001	160	372	86	82	146	14	42	copy fasta	FBL	chr19	39829458	39851379
FBL_chr19_39829458_39851379	0/0	t0002	160	6	6	0	0	0	0	copy fasta	FBL	chr19	39829458	39851379
FBN1_chr15_48403313_48650709	0/1	t0001	2994	109	19	11	54	2	22	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0002	2994	35	17	4	7	3	4	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	1/0	t0003	2994	29	8	7	6	2	5	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0004	2994	28	1	0	22	1	4	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0005	2994	23	5	2	16	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0006	2994	13	0	1	12	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0007	2994	7	6	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0008	2994	6	6	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0009	2994	6	0	2	4	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0010	2994	5	5	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0011	2994	5	4	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0012	2994	3	2	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0013	2994	3	3	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0014	2994	2	2	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0015	2994	2	0	2	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0016	2994	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709