JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBN1_chr15_48403313_48650709	0/0	t0017	2994	1	0	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0018	2994	1	0	0	0	0	1	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0019	2994	1	0	0	0	1	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0020	2994	1	0	0	0	0	1	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0021	2994	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0022	2994	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0023	2994	1	0	0	0	1	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0024	2994	1	0	0	1	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0025	2994	1	0	1	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0026	2994	1	0	0	0	0	1	copy fasta	FBN1	chr15	48403313	48650709
FBN1_chr15_48403313_48650709	0/0	t0027	2994	1	1	0	0	0	0	copy fasta	FBN1	chr15	48403313	48650709
FBN2_chr5_128252909_128543245	0/1	t0001	2189	99	3	28	47	5	15	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0002	2189	35	15	0	13	1	6	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0003	2189	14	0	2	8	0	4	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0004	2190	14	5	4	3	1	1	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0005	2191	11	9	2	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0006	2189	10	8	2	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0007	2190	7	1	3	3	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0008	2190	5	5	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0009	2190	4	4	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0010	2192	3	3	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0011	2189	2	2	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0012	2191	2	2	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0013	2189	2	0	1	0	1	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0014	2190	2	2	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	1/0	t0015	2189	2	0	0	0	1	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0016	2190	1	0	1	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0017	2190	1	0	0	0	0	1	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0018	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0019	2189	1	0	1	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0020	2189	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0021	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0022	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0023	2191	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0024	2192	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0025	2189	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0026	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0027	2191	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0028	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0029	2192	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0030	2189	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0031	2189	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0032	2192	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0033	2191	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0034	2189	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0035	2189	1	0	0	1	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0036	2189	1	0	0	0	1	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0037	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0038	2190	1	1	0	0	0	0	copy fasta	FBN2	chr5	128252909	128543245
FBN2_chr5_128252909_128543245	0/0	t0039	2189	1	0	0	0	0	1	copy fasta	FBN2	chr5	128252909	128543245