JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBRSL1_chr12_132485151_132590188	0/0	t0028	1806	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0029	1833	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0030	1817	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0031	1823	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0032	1833	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0033	1837	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0034	1833	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0035	1834	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0036	1841	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0037	1822	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0038	1836	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0039	1836	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0040	1838	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0041	1835	1	0	0	0	1	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0042	1843	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0043	1833	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0044	1841	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0045	1841	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0046	1839	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0047	1823	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0048	1823	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0049	1836	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0050	1835	1	0	0	0	0	1	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0051	1823	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0052	1835	1	1	0	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0053	1809	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0054	1827	1	0	0	1	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRSL1_chr12_132485151_132590188	0/0	t0055	1836	1	0	1	0	0	0	copy fasta	FBRSL1	chr12	132485151	132590188
FBRS_chr16_30653431_30675810	1/1	t0001	2254	198	49	45	67	12	23	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0002	2255	17	6	6	4	0	1	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0003	2254	11	10	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0004	2254	6	0	5	0	0	1	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0005	2254	4	0	0	4	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0006	2254	4	4	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0007	2254	3	0	0	3	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0008	2254	2	0	0	2	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0009	2254	2	0	0	2	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0010	2254	2	2	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0011	2254	2	0	0	0	2	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0012	2254	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0013	2254	1	0	1	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0014	2254	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0015	2191	1	0	0	0	0	1	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0016	2254	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0017	2254	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0018	2254	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0019	2254	1	0	0	1	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0020	2254	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0021	2254	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810
FBRS_chr16_30653431_30675810	0/0	t0022	2255	1	1	0	0	0	0	copy fasta	FBRS	chr16	30653431	30675810