JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL16_chr16_687500_710801	0/0	t0024	2081	1	0	1	0	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0025	2081	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0026	2084	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL16_chr16_687500_710801	0/0	t0027	2081	1	0	0	1	0	0	copy fasta	FBXL16	chr16	687500	710801
FBXL17_chr5_107854035_108387098	0/0	t0001	3092	33	9	9	8	3	4	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0002	3091	26	2	7	11	0	6	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0003	3090	24	13	4	5	1	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	1/0	t0004	3093	20	4	1	11	1	2	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0005	3091	14	9	2	2	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/1	t0006	3095	11	2	1	3	1	3	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0007	3092	7	1	3	3	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0008	3091	7	0	4	2	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0009	3090	5	0	2	2	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0010	3093	5	1	2	1	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0011	3093	4	0	0	4	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0012	3091	4	3	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0013	3095	4	1	1	1	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0014	3090	4	4	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0015	3090	4	3	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0016	3091	3	0	1	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0017	3091	3	0	1	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0018	3090	3	0	0	3	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0019	3095	3	0	0	2	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0020	3094	3	0	2	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0021	3092	3	0	1	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0022	3093	2	1	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0023	3089	2	0	0	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0024	3096	2	0	1	0	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0025	3092	2	1	0	0	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0026	3097	2	0	0	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0027	3093	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0028	3095	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0029	3096	2	0	0	2	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0030	3091	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0031	3090	2	2	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0032	3093	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0033	3094	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0034	3092	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0035	3105	1	0	0	0	0	1	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0036	3093	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0037	3093	1	0	0	0	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0038	3092	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0039	3092	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0040	3090	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0041	3093	1	0	0	1	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0042	3090	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0043	3089	1	0	0	0	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0044	3092	1	0	0	0	1	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0045	3095	1	0	1	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098
FBXL17_chr5_107854035_108387098	0/0	t0046	3091	1	1	0	0	0	0	copy fasta	FBXL17	chr5	107854035	108387098