JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL19_chr16_30918572_30953783	0/0	t0010	2468	2	0	1	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0011	2467	2	1	1	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0012	2466	2	2	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0013	2466	2	2	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0014	2466	1	1	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0015	2468	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0016	2468	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0017	2467	1	1	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0018	2466	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0019	2466	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0020	2466	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0021	2466	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0022	2467	1	0	0	1	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL19_chr16_30918572_30953783	0/0	t0023	2467	1	1	0	0	0	0	copy fasta	FBXL19	chr16	30918572	30953783
FBXL20_chr17_39247663_39406626	0/0	t0001	9021	67	11	15	31	6	4	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	1/0	t0002	9022	36	9	6	15	3	2	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0003	9023	10	1	6	3	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0004	9025	8	0	4	4	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0005	9018	8	7	0	0	1	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0006	9020	4	1	0	3	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0007	9019	4	4	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0008	9023	4	1	0	3	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0009	9024	4	4	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0010	9023	4	0	0	4	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0011	9022	3	2	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0012	9029	3	3	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0013	9020	3	3	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0014	9021	3	1	2	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0015	9021	3	3	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0016	9010	3	3	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0017	9020	2	1	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0018	9021	2	0	1	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0019	9020	2	1	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0020	9022	2	2	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0021	9018	2	2	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0022	9023	2	2	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0023	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0024	9020	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0025	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0026	9019	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0027	9020	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0028	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0029	9021	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0030	9020	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0031	9022	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0032	9020	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0033	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0034	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0035	9021	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0036	9021	1	0	0	0	0	1	copy fasta	FBXL20	chr17	39247663	39406626