JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL20_chr17_39247663_39406626	0/0	t0037	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0038	9021	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/1	t0039	9022	1	0	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0040	9022	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0041	9022	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0042	9019	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0043	9020	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0044	9021	1	0	0	0	0	1	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0045	9021	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0046	9020	1	0	0	0	1	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0047	9023	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0048	9022	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0049	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0050	9024	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0051	9024	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0052	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0053	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0054	9021	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0055	9022	1	0	0	0	1	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0056	9022	1	0	0	0	0	1	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0057	9022	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0058	9023	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0059	9023	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0060	9023	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0061	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0062	9018	1	0	0	0	0	1	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0063	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0064	9024	1	0	1	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0065	9025	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0066	9024	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0067	9022	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0068	9024	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0069	9024	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0070	9023	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0071	9011	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0072	9011	1	1	0	0	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL20_chr17_39247663_39406626	0/0	t0073	9022	1	0	0	1	0	0	copy fasta	FBXL20	chr17	39247663	39406626
FBXL22_chr15_63592387_63606241	1/1	t0001	209	320	83	68	105	18	44	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	t0002	209	15	13	0	2	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL22_chr15_63592387_63606241	0/0	t0003	209	1	0	0	1	0	0	copy fasta	FBXL22	chr15	63592387	63606241
FBXL2_chr3_33272442_33393092	1/0	t0001	2556	104	22	11	54	4	12	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0002	2565	74	2	11	53	2	6	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0003	2558	31	0	9	18	3	1	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0004	2567	19	19	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0005	2565	17	2	1	10	1	3	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0006	2560	15	8	3	2	0	2	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0007	2557	9	4	0	2	1	2	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0008	2561	9	2	3	4	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0009	2560	9	9	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0010	2565	6	3	0	3	0	0	copy fasta	FBXL2	chr3	33272442	33393092