JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL2_chr3_33272442_33393092	0/0	t0011	2555	6	1	1	3	1	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0012	2566	4	0	1	3	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0013	2562	4	4	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0014	2559	4	0	0	3	0	1	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0015	2565	3	0	3	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0016	2555	3	0	1	0	0	2	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0017	2565	2	1	1	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0018	2565	2	0	0	2	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0019	2565	2	0	0	0	0	2	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0020	2560	2	0	0	0	0	2	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0021	2555	2	2	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0022	2555	1	0	0	0	0	1	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0023	2556	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0024	2565	1	0	1	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0025	2567	1	0	1	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0026	2558	1	0	1	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0027	2562	1	1	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0028	2556	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0029	2559	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0030	2905	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0031	2554	1	1	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0032	2559	1	1	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/0	t0033	2565	1	0	0	1	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL2_chr3_33272442_33393092	0/1	t0034	2558	1	0	0	0	0	0	copy fasta	FBXL2	chr3	33272442	33393092
FBXL3_chr13_77000260_77032159	0/1	t0001	2219	314	75	60	133	12	33	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0002	2219	43	2	7	32	0	2	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0003	2219	32	0	2	29	1	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0004	2219	7	7	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0005	2219	6	6	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0006	2219	1	1	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0007	2219	1	0	0	0	1	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0008	2219	1	1	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0009	2219	1	0	0	1	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	1/0	t0010	2219	1	0	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0011	2219	1	0	0	1	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0012	2219	1	0	0	0	0	1	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0013	2219	1	0	1	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0014	2219	1	1	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL3_chr13_77000260_77032159	0/0	t0015	2219	1	1	0	0	0	0	copy fasta	FBXL3	chr13	77000260	77032159
FBXL4_chr6_98863535_98952946	1/1	t0001	6193	75	8	22	34	0	9	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0002	6190	55	12	5	35	0	3	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0003	6193	52	21	17	4	4	6	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0004	6190	39	1	8	25	0	5	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0005	6193	36	0	8	28	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0006	6193	20	10	7	1	0	2	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0007	6193	8	0	0	8	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0008	6190	5	0	0	2	0	3	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0009	6188	5	1	1	0	2	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0010	6193	4	3	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0011	6191	4	0	1	3	0	0	copy fasta	FBXL4	chr6	98863535	98952946