JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL4_chr6_98863535_98952946	0/0	t0012	6193	4	0	0	4	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0013	6193	4	0	3	0	0	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0014	6193	4	0	0	4	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0015	6191	3	3	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0016	6189	3	0	0	3	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0017	6193	3	0	0	3	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0018	6193	3	0	0	3	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0019	6193	3	3	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0020	6193	2	2	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0021	6194	2	0	0	1	0	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0022	6193	2	2	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0023	6193	2	1	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0024	6190	2	0	0	2	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0025	6193	2	0	0	0	0	2	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0026	6194	2	1	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0027	6193	2	2	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0028	6188	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0029	6188	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0030	6189	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0031	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0032	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0033	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0034	6193	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0035	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0036	6193	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0037	6193	1	0	0	0	0	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0038	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0039	6194	1	0	0	0	0	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0040	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0041	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0042	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0043	6190	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0044	6190	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0045	6190	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0046	6193	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0047	6193	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0048	6193	1	0	0	0	0	1	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0049	6193	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0050	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0051	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0052	6194	1	0	0	1	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0053	6193	1	0	1	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0054	6193	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL4_chr6_98863535_98952946	0/0	t0055	6190	1	1	0	0	0	0	copy fasta	FBXL4	chr6	98863535	98952946
FBXL5_chr4_15599381_15660357	0/0	t0001	1412	144	26	22	79	4	13	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0002	1413	107	18	18	51	5	15	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	1/0	t0003	1413	87	37	15	22	2	10	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0004	1412	48	9	5	32	0	2	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/1	t0005	1413	20	0	8	8	3	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0006	1412	2	0	0	2	0	0	copy fasta	FBXL5	chr4	15599381	15660357