JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXL5_chr4_15599381_15660357	0/0	t0007	1413	2	0	2	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0008	1413	2	2	0	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0009	1413	2	2	0	0	0	0	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0010	1413	1	0	0	0	0	1	copy fasta	FBXL5	chr4	15599381	15660357
FBXL5_chr4_15599381_15660357	0/0	t0011	1413	1	0	0	0	0	1	copy fasta	FBXL5	chr4	15599381	15660357
FBXL6_chr8_144350431_144363472	1/1	t0001	126	382	94	66	160	18	42	copy fasta	FBXL6	chr8	144350431	144363472
FBXL6_chr8_144350431_144363472	0/0	t0002	126	6	4	2	0	0	0	copy fasta	FBXL6	chr8	144350431	144363472
FBXL7_chr5_15495180_15944793	0/0	t0001	3105	61	18	14	20	4	5	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0002	3106	21	9	4	4	2	2	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0003	3109	8	7	0	0	0	1	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0004	3106	6	1	1	3	0	1	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0005	3105	5	4	0	1	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0006	3106	4	3	1	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0007	3105	3	3	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0008	3109	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0009	3106	2	2	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0010	3106	1	0	0	0	0	1	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0011	3109	1	0	1	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0012	3106	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0013	3105	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0014	3106	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0015	3105	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0016	3106	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0017	3105	1	0	1	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0018	3106	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL7_chr5_15495180_15944793	0/0	t0019	3106	1	1	0	0	0	0	copy fasta	FBXL7	chr5	15495180	15944793
FBXL8_chr16_67154957_67169174	0/1	t0001	507	213	71	42	56	10	33	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	t0002	509	17	17	0	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	1/0	t0003	506	11	4	3	0	0	3	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	t0004	507	1	0	0	1	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	t0005	507	1	0	0	1	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXL8_chr16_67154957_67169174	0/0	t0006	507	1	0	1	0	0	0	copy fasta	FBXL8	chr16	67154957	67169174
FBXO10_chr9_37505892_37581380	1/1	t0001	1832	272	76	54	94	12	34	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0002	1832	6	5	1	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0003	1832	4	4	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0004	1832	2	2	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0005	1832	2	0	2	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0006	1832	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0007	1832	1	0	1	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0008	1832	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO10_chr9_37505892_37581380	0/0	t0009	1832	1	1	0	0	0	0	copy fasta	FBXO10	chr9	37505892	37581380
FBXO11_chr2_47801920_47911498	0/0	t0001	1976	209	53	33	86	12	25	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	1/1	t0002	1977	84	23	26	23	2	8	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0003	1977	6	6	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0004	1982	3	0	0	3	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0005	2004	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0006	1976	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0007	1976	1	0	0	0	0	1	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0008	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0009	1977	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498