JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO11_chr2_47801920_47911498	0/0	t0010	1977	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0011	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0012	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0013	1977	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0014	1977	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0015	1976	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0016	1992	1	0	1	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0017	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0018	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0019	1976	1	0	0	1	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO11_chr2_47801920_47911498	0/0	t0020	1977	1	1	0	0	0	0	copy fasta	FBXO11	chr2	47801920	47911498
FBXO15_chr18_74068368_74152834	1/1	t0001	143	262	76	47	102	8	27	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	t0002	143	46	0	14	28	1	3	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	t0003	143	9	9	0	0	0	0	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	t0004	143	6	1	3	0	1	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO15_chr18_74068368_74152834	0/0	t0005	143	1	0	0	0	0	1	copy fasta	FBXO15	chr18	74068368	74152834
FBXO16_chr8_28423412_28495229	0/0	t0001	376	217	54	26	107	4	26	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	1/0	t0002	376	85	5	24	36	9	10	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/1	t0003	376	80	30	8	35	1	5	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	t0004	376	10	9	1	0	0	0	copy fasta	FBXO16	chr8	28423412	28495229
FBXO16_chr8_28423412_28495229	0/0	t0005	376	2	0	1	0	0	1	copy fasta	FBXO16	chr8	28423412	28495229
FBXO17_chr19_38936401_38980742	0/0	t0001	1384	112	3	13	81	4	11	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0002	1383	81	28	25	20	2	6	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/1	t0003	1381	57	5	10	25	2	14	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	1/0	t0004	1382	40	3	17	1	7	11	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0005	1381	32	5	6	20	1	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0006	1384	16	16	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0007	1383	11	2	2	4	1	2	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0008	1384	9	5	0	4	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0009	1381	7	7	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0010	1384	4	4	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0011	1382	4	2	0	0	1	1	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0012	1384	4	4	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0013	1384	3	1	0	2	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0014	1382	2	0	1	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0015	1385	2	0	0	2	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0016	1384	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0017	1383	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0018	1383	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0019	1383	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0020	1382	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0021	1384	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0022	1382	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0023	1382	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0024	1381	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0025	1381	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0026	1385	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0027	1385	1	1	0	0	0	0	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0028	1384	1	0	0	0	0	1	copy fasta	FBXO17	chr19	38936401	38980742
FBXO17_chr19_38936401_38980742	0/0	t0029	1382	1	0	0	1	0	0	copy fasta	FBXO17	chr19	38936401	38980742