Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCD2_chr12_39545033_39624803	0/0	t0026	4068	1	0	1	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0027	4068	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0028	4068	1	0	0	0	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0029	4068	1	0	0	0	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0030	4068	1	0	1	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	1/0	t0001	1625	106	27	16	50	3	9	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/1	t0002	1624	76	5	17	38	5	10	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0003	1625	51	10	6	24	2	9	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0004	1625	30	0	0	29	1	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0005	1626	29	3	1	24	0	1	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0006	1625	20	16	1	3	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0007	1625	7	1	1	1	0	4	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0008	1625	5	5	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0009	1626	4	0	0	3	1	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0010	1625	4	0	4	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0011	1625	3	3	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0012	1625	3	3	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0013	1686	2	0	2	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0014	1625	2	2	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0015	1625	2	0	0	2	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0016	1640	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0017	1638	1	0	1	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0018	1627	1	0	0	0	0	1	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0019	1628	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0020	1628	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0021	1628	1	0	1	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0022	1629	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0023	1628	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0024	1624	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0025	1625	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0026	1624	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0027	1626	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0028	1624	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0029	1625	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0030	1626	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0031	1625	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0032	1624	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	t0033	1626	1	0	0	1	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	1/1	t0001	1215	222	27	46	102	15	30	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0002	1215	90	21	7	54	0	8	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0003	1215	12	0	9	2	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0004	1215	11	9	1	0	1	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0005	1215	9	8	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0006	1215	8	0	8	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0007	1215	5	5	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0008	1215	4	4	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0009	1215	4	3	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0010	1215	3	3	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0011	1215	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	t0012	1215	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934