JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO21_chr12_117136991_117195470	1/0	t0001	4111	122	34	21	48	7	11	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/1	t0002	4112	93	2	11	66	1	12	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0003	4111	44	12	1	26	1	4	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0004	4106	33	2	24	2	2	3	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0005	4111	18	0	0	18	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0006	4112	10	8	1	0	1	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0007	4114	7	0	0	7	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0008	4112	7	7	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0009	4111	6	6	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0010	4111	5	4	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0011	4111	5	0	0	5	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0012	4112	4	0	1	2	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0013	4113	3	2	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0014	4110	3	0	0	2	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0015	4113	3	0	0	2	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0016	4111	2	2	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0017	4108	2	1	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0018	4111	2	0	0	2	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0019	4111	2	0	0	0	1	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0020	4111	2	0	2	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0021	4113	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0022	4112	1	0	0	0	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0023	4111	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0024	4107	1	0	0	0	1	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0025	4106	1	0	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0026	4105	1	0	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0027	4111	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0028	4109	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0029	4111	1	0	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0030	4112	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0031	4111	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0032	4111	1	0	0	0	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0033	4108	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0034	4111	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0035	4110	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0036	4112	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0037	4110	1	0	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0038	4111	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0039	4111	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0040	4111	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0041	4111	1	0	0	0	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0042	4110	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0043	4110	1	1	0	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0044	4114	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0045	4112	1	0	0	0	0	1	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0046	4112	1	0	1	0	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0047	4112	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0048	4113	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO21_chr12_117136991_117195470	0/0	t0049	4111	1	0	0	1	0	0	copy fasta	FBXO21	chr12	117136991	117195470
FBXO22_chr15_75898878_75947511	0/0	t0001	9483	49	7	10	25	1	6	copy fasta	FBXO22	chr15	75898878	75947511