JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO22_chr15_75898878_75947511	0/1	t0002	9485	40	12	2	24	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0003	9492	36	2	5	21	3	5	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0004	9482	26	0	3	22	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0005	9484	12	2	2	6	0	2	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0006	9484	11	1	2	8	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0007	9484	10	3	1	5	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0008	9485	10	0	7	2	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0009	9493	9	0	1	6	0	2	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0010	9486	7	2	3	0	1	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0011	9484	7	6	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0012	9484	6	0	2	0	1	3	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0013	9479	5	4	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0014	9492	5	0	0	5	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0015	9483	4	0	0	4	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0016	9484	4	0	0	3	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0017	9493	4	4	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0018	9493	3	0	1	1	1	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0019	9483	3	0	1	2	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0020	9485	3	0	0	3	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0021	9482	2	0	0	0	2	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0022	9494	2	2	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0023	9483	2	0	0	2	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0024	9483	2	0	0	0	1	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0025	9493	2	0	0	0	0	2	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0026	9485	2	0	0	1	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0027	9494	2	0	0	2	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0028	9494	2	2	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0029	9483	2	2	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0030	9483	2	0	0	0	0	2	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0031	9483	2	0	0	2	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0032	9486	2	0	1	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0033	9485	2	0	0	2	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0034	9485	2	0	0	0	0	2	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0035	9484	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0036	9497	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0037	9497	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0038	9495	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0039	9496	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0040	9495	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0041	9492	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0042	9492	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0043	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0044	9482	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0045	9496	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0046	9485	1	0	0	0	1	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0047	9492	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0048	9486	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0049	9484	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0050	9483	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0051	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511