JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO22_chr15_75898878_75947511	0/0	t0052	9480	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0053	9486	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0054	9485	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0055	9485	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0056	9483	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0057	9493	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0058	9493	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0059	9493	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0060	9485	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0061	9483	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0062	9482	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0063	9480	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0064	9479	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0065	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0066	9484	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0067	9483	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0068	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0069	9484	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0070	9484	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0071	9484	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0072	9481	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0073	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0074	9483	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0075	9482	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0076	9493	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0077	9492	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0078	9491	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0079	9490	1	0	0	0	1	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0080	9493	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0081	9492	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0082	9495	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0083	9497	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0084	9494	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0085	9482	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0086	9482	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0087	9481	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0088	9491	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0089	9495	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0090	9485	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0091	9486	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0092	9487	1	0	1	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0093	9484	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0094	9486	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0095	9490	1	1	0	0	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0096	9473	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0097	9472	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0098	9484	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0099	9483	1	0	0	0	0	1	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0100	9483	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511
FBXO22_chr15_75898878_75947511	0/0	t0101	9482	1	0	0	1	0	0	copy fasta	FBXO22	chr15	75898878	75947511