JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO28_chr1_224109111_224167047	0/0	t0004	4321	14	0	4	10	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0005	4316	12	5	4	3	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0006	4322	10	10	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0007	4321	8	7	1	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0008	4322	7	4	0	0	0	3	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0009	4318	7	0	0	7	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0010	4321	5	5	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0011	4321	4	0	1	0	1	2	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0012	4321	3	3	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0013	4321	3	0	3	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0014	4321	3	0	2	0	1	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0015	4321	3	3	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0016	4321	3	0	0	3	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0017	4321	2	2	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0018	4321	2	0	0	2	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0019	4321	2	0	0	0	2	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0020	4319	2	0	2	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0021	4319	2	0	0	1	0	1	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0022	4321	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0023	4319	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0024	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0025	4321	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0026	4321	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0027	4302	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0028	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0029	4321	1	0	0	0	0	1	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0030	4321	1	0	0	0	0	1	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0031	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0032	4321	1	0	0	0	0	1	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0033	4321	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0034	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0035	4316	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0036	4321	1	0	1	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	1/0	t0037	4321	1	0	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0038	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0039	4321	1	0	0	1	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0040	4319	1	0	1	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO28_chr1_224109111_224167047	0/0	t0041	4319	1	1	0	0	0	0	copy fasta	FBXO28	chr1	224109111	224167047
FBXO2_chr1_11643387_11659429	1/0	t0001	397	255	65	23	132	5	29	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/1	t0002	397	163	28	55	49	11	19	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	t0003	397	9	0	0	9	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO2_chr1_11643387_11659429	0/0	t0004	397	1	1	0	0	0	0	copy fasta	FBXO2	chr1	11643387	11659429
FBXO30_chr6_145788502_145819795	0/0	t0001	6814	139	19	36	63	7	14	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0002	6814	64	3	6	46	1	8	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0003	6814	23	1	6	6	3	7	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/1	t0004	6814	20	10	3	2	0	4	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0005	6814	19	0	2	17	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0006	6814	17	15	2	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0007	6814	15	14	1	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0008	6814	6	0	0	6	0	0	copy fasta	FBXO30	chr6	145788502	145819795