JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO30_chr6_145788502_145819795	0/0	t0009	6814	3	3	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0010	6814	3	3	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0011	6814	3	3	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0012	6814	3	0	0	3	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0013	6814	3	1	0	0	1	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0014	6814	3	3	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0015	6814	2	0	0	2	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0016	6814	2	2	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0017	6814	2	1	1	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0018	6803	2	2	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0019	6814	2	2	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0020	6814	2	0	0	2	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0021	6814	2	0	2	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0022	6814	2	0	0	2	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0023	6814	2	2	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0024	6814	2	0	2	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0025	6814	2	2	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0026	6814	1	0	0	0	1	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0027	6814	1	0	0	0	0	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0028	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0029	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0030	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0031	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0032	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0033	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0034	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0035	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0036	6814	1	0	1	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0037	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0038	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0039	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	1/0	t0040	6814	1	0	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0041	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0042	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0043	6814	1	0	0	1	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0044	6814	1	1	0	0	0	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0045	6814	1	0	0	0	1	0	copy fasta	FBXO30	chr6	145788502	145819795
FBXO30_chr6_145788502_145819795	0/0	t0046	6814	1	0	0	0	0	1	copy fasta	FBXO30	chr6	145788502	145819795
FBXO31_chr16_87321987_87388776	1/1	t0001	4334	92	13	11	46	1	19	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0002	4334	70	10	12	39	4	5	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0003	4334	56	8	23	13	8	4	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0004	4334	51	0	14	23	1	13	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0005	4334	7	7	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0006	4335	7	6	1	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0007	4337	7	6	1	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0008	4333	6	0	0	6	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0009	4335	6	4	2	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0010	4334	5	4	1	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0011	4334	4	4	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO31_chr16_87321987_87388776	0/0	t0012	4334	4	0	0	4	0	0	copy fasta	FBXO31	chr16	87321987	87388776