Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKAP12_chr6_151234967_151363559	0/0	t0001	3113	108	13	26	49	8	12	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	1/0	t0002	3118	62	10	13	28	0	10	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0003	3118	24	3	0	19	0	2	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/1	t0004	3117	20	5	5	1	0	8	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0005	3118	10	0	0	10	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0006	3118	7	7	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0007	3120	6	0	4	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0008	3117	5	5	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0009	3117	5	5	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0010	3119	5	0	2	3	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0011	3114	5	5	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0012	3118	5	5	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0013	3118	4	3	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0014	3112	4	0	0	3	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0015	3113	4	0	4	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0016	3113	3	3	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0017	3117	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0018	3117	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0019	3117	2	1	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0020	3114	2	0	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0021	3113	2	1	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0022	3113	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0023	3113	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0024	3118	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0025	3118	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0026	3114	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0027	3116	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0028	3114	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0029	3116	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0030	3117	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0031	3117	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0032	3118	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0033	3116	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0034	3118	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0035	3113	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0036	3114	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0037	3112	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0038	3118	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0039	3116	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0040	3114	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0041	3118	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0042	3119	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0043	3117	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0044	3117	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0045	3118	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0046	3112	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0047	3113	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0048	3118	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	t0049	3113	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP13_chr15_85375603_85754355	0/0	t0001	4890	42	8	3	25	1	5	copy fasta	AKAP13	chr15	85375603	85754355