JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO31_chr16_87321987_87388776	0/0	t0063	4334	1	1	0	0	0	0	copy fasta	FBXO31	chr16	87321987	87388776
FBXO32_chr8_123492889_123546206	0/1	t0001	5687	79	22	15	21	6	14	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0002	5678	48	3	9	33	1	2	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0003	5678	39	0	5	30	1	3	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0004	5677	38	0	11	25	0	2	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0005	5677	23	0	2	18	0	3	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0006	5687	20	0	0	17	0	3	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0007	5677	17	11	6	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0008	5677	16	2	3	4	2	5	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0009	5677	10	0	0	10	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	1/0	t0010	5677	10	5	2	0	1	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0011	5677	8	7	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0012	5678	7	7	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0013	5677	6	5	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0014	5677	5	5	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0015	5678	4	2	2	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0016	5687	4	0	0	4	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0017	5677	3	0	1	2	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0018	5677	3	3	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0019	5687	3	0	0	3	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0020	5688	3	0	3	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0021	5687	3	0	3	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0022	5677	3	1	2	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0023	5677	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0024	5678	2	0	0	2	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0025	5678	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0026	5687	2	0	0	0	0	2	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0027	5687	2	1	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0028	5688	2	0	0	0	0	2	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0029	5677	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0030	5677	2	0	0	0	2	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0031	5677	2	0	2	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0032	5677	2	2	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0033	5677	2	0	1	0	1	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0034	5678	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0035	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0036	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0037	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0038	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0039	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0040	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0041	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0042	5687	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0043	5687	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0044	5687	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0045	5687	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0046	5687	1	0	0	0	1	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0047	5689	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0048	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0049	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206