JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO32_chr8_123492889_123546206	0/0	t0050	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0051	5677	1	0	0	0	1	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0052	5677	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0053	5678	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0054	5677	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0055	5677	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0056	5677	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0057	5677	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0058	5688	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0059	5686	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0060	5685	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0061	5686	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0062	5686	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0063	5685	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0064	5685	1	1	0	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0065	5678	1	0	0	1	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0066	5677	1	0	1	0	0	0	copy fasta	FBXO32	chr8	123492889	123546206
FBXO32_chr8_123492889_123546206	0/0	t0067	5687	1	0	0	0	0	1	copy fasta	FBXO32	chr8	123492889	123546206
FBXO33_chr14_39392684_39437433	1/1	t0001	2104	147	26	34	63	7	15	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0002	2104	119	31	20	64	0	4	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0003	2104	32	1	3	12	1	15	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0004	2104	29	8	12	4	1	4	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0005	2105	22	18	1	3	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0006	2103	9	0	0	8	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0007	2104	7	0	6	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0008	2103	6	6	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0009	2105	2	2	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0010	2104	2	0	1	0	1	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0011	2105	2	0	1	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0012	2104	1	0	0	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0013	2103	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0014	2105	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0015	2104	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0016	2104	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0017	2104	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0018	2104	1	0	1	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0019	2104	1	0	1	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0020	2104	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0021	2104	1	0	0	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0022	2104	1	0	0	0	0	1	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0023	2104	1	0	0	1	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO33_chr14_39392684_39437433	0/0	t0024	2104	1	1	0	0	0	0	copy fasta	FBXO33	chr14	39392684	39437433
FBXO34_chr14_55266421_55358611	1/1	t0001	1213	123	8	20	72	4	17	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0002	1212	77	16	6	47	1	7	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0003	1212	69	15	14	20	4	16	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0004	1213	29	20	8	1	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0005	1213	10	0	4	6	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0006	1212	9	9	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0007	1212	7	7	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0008	1212	3	1	2	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611