JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO34_chr14_55266421_55358611	0/0	t0009	1212	3	3	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0010	1213	1	1	0	0	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0011	1212	1	0	0	0	1	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0012	1213	1	0	0	1	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO34_chr14_55266421_55358611	0/0	t0013	1212	1	0	0	1	0	0	copy fasta	FBXO34	chr14	55266421	55358611
FBXO36_chr2_229917503_230018119	0/1	t0001	2248	159	23	23	78	7	27	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0002	2249	122	31	32	37	9	13	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	1/0	t0003	2247	15	11	2	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0004	2248	6	3	2	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0005	2247	6	6	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0006	2249	5	0	2	2	0	1	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0007	2251	5	5	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0008	2251	4	4	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0009	2250	3	2	1	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0010	2248	2	0	0	2	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0011	2249	2	2	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0012	2247	2	2	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0013	1530	2	1	1	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0014	2249	2	2	0	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0015	2248	1	0	1	0	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0016	2248	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0017	2249	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0018	2248	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0019	2248	1	0	0	0	0	1	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0020	2391	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO36_chr2_229917503_230018119	0/0	t0021	2248	1	0	0	1	0	0	copy fasta	FBXO36	chr2	229917503	230018119
FBXO38_chr5_148378958_148447836	0/0	t0001	835	153	55	19	64	1	14	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	1/1	t0002	835	139	17	26	68	5	21	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0003	835	42	11	0	29	0	2	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0004	835	21	0	3	16	0	2	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0005	835	3	0	2	0	0	1	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0006	835	3	3	0	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0007	835	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0008	835	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0009	835	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0010	835	1	0	1	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0011	835	1	0	1	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0012	835	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0013	835	1	0	0	1	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0014	835	1	1	0	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO38_chr5_148378958_148447836	0/0	t0015	835	1	1	0	0	0	0	copy fasta	FBXO38	chr5	148378958	148447836
FBXO39_chr17_6771215_6792646	1/1	t0001	357	240	64	50	79	13	32	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	t0002	358	183	18	19	133	3	10	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	t0003	357	26	15	9	0	0	2	copy fasta	FBXO39	chr17	6771215	6792646
FBXO39_chr17_6771215_6792646	0/0	t0004	358	7	1	2	0	0	4	copy fasta	FBXO39	chr17	6771215	6792646
FBXO3_chr11_33735944_33779520	0/0	t0001	988	208	49	37	83	8	31	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	1/1	t0002	988	158	25	24	93	3	11	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0003	988	9	7	2	0	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0004	988	2	0	1	0	1	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0005	988	1	0	0	0	0	1	copy fasta	FBXO3	chr11	33735944	33779520