JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO3_chr11_33735944_33779520	0/0	t0006	988	1	1	0	0	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0007	988	1	0	0	1	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0008	988	1	0	0	1	0	0	copy fasta	FBXO3	chr11	33735944	33779520
FBXO3_chr11_33735944_33779520	0/0	t0009	988	1	0	0	0	0	1	copy fasta	FBXO3	chr11	33735944	33779520
FBXO40_chr3_121588379_121635295	0/0	t0001	3540	85	14	26	25	4	16	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0002	3539	72	8	13	45	0	6	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/1	t0003	3541	55	18	10	17	5	4	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0004	3540	39	0	0	35	0	4	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	1/0	t0005	3540	38	13	2	15	0	7	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0006	3540	38	4	11	7	8	8	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0007	3540	15	0	0	15	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0008	3540	8	8	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0009	3540	7	0	0	7	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0010	3540	5	5	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0011	3540	4	0	4	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0012	3540	4	3	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0013	3540	4	4	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0014	3541	4	3	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0015	3540	3	0	0	3	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0016	3541	3	3	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0017	3541	3	0	3	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0018	3540	2	2	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0019	3540	2	0	0	2	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0020	3540	2	2	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0021	3541	2	0	0	0	1	1	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0022	3540	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0023	3540	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0024	3540	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0025	3540	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0026	3540	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0027	3540	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0028	3540	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0029	3539	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0030	3539	1	0	0	1	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0031	3540	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0032	3541	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0033	3540	1	0	1	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO40_chr3_121588379_121635295	0/0	t0034	3539	1	1	0	0	0	0	copy fasta	FBXO40	chr3	121588379	121635295
FBXO41_chr2_73249690_73289478	1/1	t0001	4750	103	7	30	42	5	17	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0002	4750	52	4	13	29	3	3	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0003	4750	43	2	3	30	2	6	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0004	4750	30	23	1	3	2	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0005	4750	28	2	0	24	0	2	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0006	4750	18	15	0	0	2	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0007	4750	12	10	2	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0008	4750	11	0	7	0	0	4	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0009	4750	9	3	3	3	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0010	4750	8	0	0	8	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0011	4750	7	7	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0012	4750	4	3	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478