JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO41_chr2_73249690_73289478	0/0	t0013	4750	4	1	0	1	0	2	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0014	4750	4	2	1	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0015	4750	3	0	0	3	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0016	4750	3	2	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0017	4750	2	0	0	2	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0018	4750	2	0	0	2	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0019	4750	2	0	0	2	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0020	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0021	4750	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0022	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0023	4750	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0024	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0025	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0026	4750	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0027	4750	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0028	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0029	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0030	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0031	4750	1	0	0	0	1	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0032	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0033	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0034	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0035	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0036	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0037	4750	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0038	4750	1	1	0	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0039	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0040	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0041	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0042	4750	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0043	4750	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0044	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0045	4750	1	0	0	1	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0046	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0047	4750	1	0	1	0	0	0	copy fasta	FBXO41	chr2	73249690	73289478
FBXO41_chr2_73249690_73289478	0/0	t0048	4750	1	0	0	0	0	1	copy fasta	FBXO41	chr2	73249690	73289478
FBXO42_chr1_16241840_16357480	0/0	t0001	4074	89	5	19	47	6	12	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	1/0	t0002	4074	88	33	22	21	1	10	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/1	t0003	4073	36	2	6	22	2	3	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0004	4073	23	9	7	5	1	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0005	4074	12	12	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0006	4073	11	10	1	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0007	4069	5	0	3	0	1	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0008	4077	4	4	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0009	4073	3	3	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0010	4074	3	3	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0011	4079	3	3	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0012	4069	2	0	2	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0013	4074	2	0	1	0	1	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0014	4078	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480