JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO42_chr1_16241840_16357480	0/0	t0015	4078	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0016	4073	1	0	0	1	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0017	4074	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0018	4074	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0019	4074	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0020	4074	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0021	4074	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0022	4074	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0023	4074	1	0	1	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0024	4073	1	1	0	0	0	0	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0025	4074	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO42_chr1_16241840_16357480	0/0	t0026	4074	1	0	0	0	0	1	copy fasta	FBXO42	chr1	16241840	16357480
FBXO43_chr8_100128351_100150817	1/0	t0001	1134	178	35	38	80	6	18	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/1	t0002	1134	149	27	29	71	4	17	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0003	1137	51	19	2	25	0	5	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0004	1137	4	3	1	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0005	1134	4	3	1	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0006	1134	3	0	1	0	2	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0007	1134	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0008	1134	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO43_chr8_100128351_100150817	0/0	t0009	1137	1	1	0	0	0	0	copy fasta	FBXO43	chr8	100128351	100150817
FBXO44_chr1_11649877_11668327	0/0	t0001	2161	138	15	18	78	10	17	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0002	2155	69	8	17	31	1	12	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/1	t0003	2157	51	7	23	14	2	4	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0004	2157	44	44	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0005	2157	43	0	4	34	2	3	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0006	2159	16	4	5	0	1	6	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0007	2162	13	1	2	7	0	3	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0008	2160	8	2	2	4	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0009	2157	4	4	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0010	2157	2	0	1	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0011	2161	2	1	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0012	2157	2	2	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0013	2159	2	0	1	0	0	1	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0014	2161	1	0	0	0	0	1	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0015	2161	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0016	2172	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0017	2157	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0018	2176	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0019	2161	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0020	2161	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0021	2157	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0022	2157	1	0	0	0	0	1	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0023	2161	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0024	2161	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0025	2159	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0026	2155	1	0	1	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0027	2157	1	1	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	0/0	t0028	2161	1	0	0	1	0	0	copy fasta	FBXO44	chr1	11649877	11668327
FBXO44_chr1_11649877_11668327	1/0	t0029	2161	1	0	0	0	0	0	copy fasta	FBXO44	chr1	11649877	11668327