JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO45_chr3_196563660_196594059	0/0	t0001	5065	90	1	11	69	0	9	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0002	5067	82	8	21	43	5	5	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0003	5067	60	18	11	18	4	9	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/1	t0004	5065	32	0	4	15	2	10	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	1/0	t0005	5067	26	0	9	9	1	6	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0006	5065	17	0	3	14	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0007	5065	16	1	0	15	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0008	5065	16	0	5	8	0	3	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0009	5065	12	11	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0010	5067	10	1	4	3	1	1	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0011	5067	8	8	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0012	5067	6	5	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0013	5067	5	0	5	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0014	5065	5	4	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0015	5067	5	1	1	0	0	3	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0016	5066	4	4	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0017	5067	3	3	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0018	5062	3	0	0	3	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0019	5058	3	3	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0020	5065	3	0	0	3	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0021	5061	3	2	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0022	5065	3	3	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0023	5067	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0024	5067	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0025	5065	2	0	0	0	2	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0026	5065	2	0	2	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0027	5065	2	0	0	1	0	1	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0028	5066	2	1	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0029	5065	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0030	5065	2	2	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0031	5061	2	0	1	0	0	1	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0032	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0033	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0034	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0035	5067	1	0	0	0	0	1	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0036	5067	1	0	0	0	1	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0037	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0038	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0039	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0040	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0041	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0042	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0043	5067	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0044	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0045	5067	1	0	0	0	0	1	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0046	5067	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0047	5065	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0048	5065	1	0	0	1	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0049	5065	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0050	5066	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059