JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO45_chr3_196563660_196594059	0/0	t0051	5062	1	0	1	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0052	5058	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO45_chr3_196563660_196594059	0/0	t0053	5061	1	1	0	0	0	0	copy fasta	FBXO45	chr3	196563660	196594059
FBXO46_chr19_45705629_45735896	0/0	t0001	1180	91	20	2	66	0	3	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	1/1	t0002	1182	82	2	34	26	3	15	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0003	1181	78	20	15	35	1	7	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0004	1182	52	13	4	29	2	4	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0005	1181	28	2	4	17	3	2	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0006	1181	14	8	3	3	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0007	1181	11	3	5	0	0	3	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0008	1180	8	7	1	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0009	1182	6	0	3	0	1	2	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0010	1183	4	2	1	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0011	1181	3	1	1	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0012	1180	3	0	1	0	0	2	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0013	1181	3	2	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0014	1182	3	3	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0015	1183	3	0	2	0	0	1	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0016	1181	2	1	1	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0017	1182	2	0	1	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0018	1181	2	2	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0019	1181	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0020	1182	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0021	1182	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0022	1181	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0023	1180	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0024	1181	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0025	1181	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0026	1181	1	0	1	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0027	1182	1	0	1	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0028	1182	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0029	1182	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0030	1181	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0031	1182	1	0	0	1	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0032	1182	1	0	0	0	0	1	copy fasta	FBXO46	chr19	45705629	45735896
FBXO46_chr19_45705629_45735896	0/0	t0033	1180	1	1	0	0	0	0	copy fasta	FBXO46	chr19	45705629	45735896
FBXO47_chr17_38931432_38972403	0/0	t0001	945	238	67	42	90	12	27	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/1	t0002	943	75	0	7	55	1	11	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0003	947	16	0	0	15	0	1	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0004	947	5	5	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0005	945	2	2	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0006	943	2	0	1	0	1	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0007	945	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0008	945	1	1	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0009	945	1	0	0	1	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0010	945	1	0	0	0	0	1	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	0/0	t0011	933	1	0	0	1	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO47_chr17_38931432_38972403	1/0	t0012	945	1	0	0	0	0	0	copy fasta	FBXO47	chr17	38931432	38972403
FBXO48_chr2_68454422_68472294	1/1	t0001	5232	124	25	19	46	9	23	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0002	5234	10	0	2	6	2	0	copy fasta	FBXO48	chr2	68454422	68472294