JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO48_chr2_68454422_68472294	0/0	t0003	5234	9	9	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0004	5237	8	8	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0005	5232	8	3	4	0	1	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0006	5233	7	3	2	0	1	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0007	5237	6	5	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0008	5233	6	1	1	3	1	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0009	5230	5	5	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0010	5236	4	3	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0011	5235	4	0	2	1	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0012	5237	3	3	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0013	5230	3	3	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0014	5237	2	2	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0015	5235	2	0	0	2	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0016	5236	2	0	2	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0017	5236	2	2	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0018	5237	1	0	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0019	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0020	5232	1	0	0	0	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0021	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0022	5236	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0023	5232	1	0	0	1	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0024	5232	1	0	0	1	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0025	5232	1	0	0	0	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0026	5232	1	0	0	0	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0027	5233	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0028	5232	1	0	0	1	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0029	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0030	5236	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0031	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0032	5236	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0033	5232	1	0	0	1	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0034	5229	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0035	5233	1	0	1	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0036	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0037	5230	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0038	5232	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0039	5228	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0040	5236	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0041	5232	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0042	5234	1	0	0	0	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0043	5234	1	0	0	0	0	1	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0044	5237	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0045	4903	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO48_chr2_68454422_68472294	0/0	t0046	4903	1	1	0	0	0	0	copy fasta	FBXO48	chr2	68454422	68472294
FBXO4_chr5_41920281_41946743	1/1	t0001	492	247	86	66	52	14	27	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	t0002	492	1	0	0	1	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	t0003	492	1	0	0	1	0	0	copy fasta	FBXO4	chr5	41920281	41946743
FBXO4_chr5_41920281_41946743	0/0	t0004	492	1	0	0	0	0	1	copy fasta	FBXO4	chr5	41920281	41946743
FBXO5_chr6_152965535_152988041	1/1	t0001	711	299	60	49	145	9	34	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0002	712	73	26	9	28	2	8	copy fasta	FBXO5	chr6	152965535	152988041