JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO5_chr6_152965535_152988041	0/0	t0003	710	46	1	12	27	4	2	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0004	712	9	0	6	0	1	2	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0005	711	5	5	0	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0006	712	1	0	1	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0007	712	1	1	0	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0008	710	1	0	1	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0009	711	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0010	711	1	1	0	0	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO5_chr6_152965535_152988041	0/0	t0011	711	1	0	0	1	0	0	copy fasta	FBXO5	chr6	152965535	152988041
FBXO6_chr1_11659200_11679354	1/1	t0001	563	207	8	40	117	10	30	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0002	563	108	72	12	14	2	8	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0003	563	64	6	17	29	2	10	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0004	563	6	6	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0005	563	1	1	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0006	563	1	1	0	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0007	563	1	0	1	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0008	563	1	0	1	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO6_chr1_11659200_11679354	0/0	t0009	563	1	0	1	0	0	0	copy fasta	FBXO6	chr1	11659200	11679354
FBXO7_chr22_32469811_32503829	1/1	t0001	492	393	86	64	194	11	36	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	t0002	492	16	0	6	1	7	2	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	t0003	492	3	3	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	t0004	492	1	1	0	0	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO7_chr22_32469811_32503829	0/0	t0005	492	1	0	0	1	0	0	copy fasta	FBXO7	chr22	32469811	32503829
FBXO8_chr4_174231658_174288667	0/0	t0001	1021	301	67	57	136	10	31	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0002	1021	34	8	1	20	1	4	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0003	1021	15	9	2	0	1	3	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0004	1021	12	0	5	2	0	5	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0005	1021	6	2	4	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0006	1021	3	0	0	3	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0007	1021	1	1	0	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0008	1021	1	1	0	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0009	1021	1	0	0	1	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0010	1021	1	0	1	0	0	0	copy fasta	FBXO8	chr4	174231658	174288667
FBXO8_chr4_174231658_174288667	0/0	t0011	1021	1	0	0	0	0	1	copy fasta	FBXO8	chr4	174231658	174288667
FBXO9_chr6_53060404_53105873	0/0	t0001	3422	47	7	17	21	0	2	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0002	3424	24	2	4	13	1	4	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/1	t0003	3418	22	3	3	10	2	3	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0004	3420	15	1	2	9	0	3	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0005	3430	12	2	0	10	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0006	3422	11	1	2	6	1	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0007	3424	10	1	5	4	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0008	3420	8	0	4	4	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0009	3426	7	1	2	3	1	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0010	3422	6	1	0	4	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0011	3420	6	2	3	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0012	3422	6	0	0	6	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0013	3422	5	0	4	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0014	3418	4	0	0	3	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0015	3426	4	1	0	0	1	2	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0016	3418	4	1	0	3	0	0	copy fasta	FBXO9	chr6	53060404	53105873