JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO9_chr6_53060404_53105873	0/0	t0017	3426	4	2	0	1	1	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0018	3420	4	0	0	1	0	3	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0019	3427	4	4	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0020	3428	3	1	2	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0021	3416	3	1	1	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0022	3430	3	0	0	3	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0023	3425	3	3	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0024	3429	3	3	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0025	3420	3	0	0	3	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0026	3430	2	1	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0027	3430	2	0	1	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0028	3434	2	1	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0029	3432	2	0	0	2	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0030	3430	2	1	0	0	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0031	3428	2	0	0	2	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0032	3425	2	1	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0033	3426	2	0	2	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0034	3421	2	2	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0035	3419	2	2	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0036	3421	2	0	0	2	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0037	3428	2	0	0	2	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0038	3426	2	0	1	0	1	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0039	3418	2	0	1	0	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0040	3423	2	2	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0041	3424	2	2	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0042	3426	2	2	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0043	3424	1	0	0	0	1	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0044	3420	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0045	3434	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0046	3432	1	0	0	0	1	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0047	3432	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	1/0	t0048	3430	1	0	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0049	3428	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0050	3424	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0051	3430	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0052	3430	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0053	3429	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0054	3429	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0055	3423	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0056	3421	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0057	3416	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0058	3427	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0059	3428	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0060	3444	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0061	3432	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0062	3427	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0063	3423	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0064	3423	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0065	3424	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0066	3425	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873