JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXO9_chr6_53060404_53105873	0/0	t0067	3424	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0068	3421	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0069	3423	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0070	3420	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0071	3420	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0072	3406	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0073	3394	1	0	0	0	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0074	3432	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0075	3431	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0076	3427	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0077	3420	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0078	3416	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0079	3439	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0080	3430	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0081	3429	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0082	3429	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0083	3426	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0084	3431	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0085	3428	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0086	3426	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0087	3422	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0088	3424	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0089	3420	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0090	3430	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0091	3428	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0092	3428	1	0	1	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0093	3426	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0094	3431	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0095	3426	1	0	0	1	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0096	3421	1	1	0	0	0	0	copy fasta	FBXO9	chr6	53060404	53105873
FBXO9_chr6_53060404_53105873	0/0	t0097	3426	1	0	0	0	0	1	copy fasta	FBXO9	chr6	53060404	53105873
FBXW10B_chr17_15578886_15624704	0/0	t0001	5282	89	13	19	44	2	11	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0002	5283	58	7	23	13	5	10	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0003	5285	58	1	9	39	2	7	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0004	5285	37	2	2	32	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0005	5284	23	0	0	23	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0006	5283	11	10	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0007	5283	9	7	0	0	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0008	5283	8	0	0	8	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0009	5284	7	7	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0010	5286	7	0	0	7	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	1/0	t0011	5282	5	4	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0012	5284	4	3	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0013	5283	4	2	0	0	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0014	5282	4	4	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0015	5282	4	0	0	4	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0016	5283	4	0	0	0	0	4	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0017	5284	4	2	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0018	5282	4	2	2	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0019	5280	4	4	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704