JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXW10B_chr17_15578886_15624704	0/1	t0020	5284	3	0	2	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0021	5283	3	0	0	3	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0022	5284	3	0	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0023	5285	3	0	1	0	0	2	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0024	5283	3	1	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0025	5281	3	0	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0026	5282	3	0	0	2	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0027	5285	3	0	1	0	2	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0028	5281	3	0	3	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0029	5280	3	3	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0030	5281	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0031	5281	2	1	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0032	5282	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0033	5282	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0034	5284	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0035	5286	2	1	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0036	5283	2	0	1	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0037	5286	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0038	5282	2	0	1	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0039	5281	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0040	5284	2	0	1	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0041	5284	2	0	1	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0042	5283	2	0	0	2	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0043	5282	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0044	5281	2	2	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0045	5283	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0046	5282	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0047	5284	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0048	5283	1	0	0	0	1	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0049	5284	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0050	5284	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0051	5283	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0052	5285	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0053	5284	1	0	0	0	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0054	5281	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0055	5282	1	0	0	0	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0056	5285	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0057	5282	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0058	5282	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0059	5283	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0060	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0061	5282	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0062	5281	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0063	5282	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0064	5280	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0065	5282	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0066	5284	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0067	5283	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0068	5284	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0069	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704