JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FBXW10B_chr17_15578886_15624704	0/0	t0070	5283	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0071	5284	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0072	5283	1	0	0	0	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0073	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0074	5282	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0075	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0076	5282	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0077	5285	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0078	5286	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0079	5285	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0080	5283	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0081	5283	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0082	5285	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0083	5284	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0084	5285	1	0	0	0	0	1	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0085	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0086	5283	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0087	5281	1	0	1	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0088	5280	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0089	5285	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0090	5284	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0091	5283	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	t0092	5284	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10_chr17_18739054_18784349	0/1	t0001	243	121	43	21	40	3	13	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	1/0	t0002	243	114	14	19	59	6	15	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	t0003	243	104	29	28	30	6	11	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	t0004	243	46	10	9	21	1	5	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	t0005	243	1	0	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW11_chr5_171856549_172011638	0/1	t0001	2716	131	57	28	31	2	12	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	t0002	2716	12	10	2	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	t0003	2716	11	9	2	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	t0004	2716	1	1	0	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	1/0	t0005	2715	1	0	0	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	t0006	2703	1	0	0	1	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	t0007	2716	1	1	0	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW12_chr3_48367219_48399725	0/1	t0001	253	200	55	32	74	10	28	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	t0002	253	132	20	30	64	6	12	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	1/0	t0003	253	8	7	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW2_chr9_120751974_120798416	1/0	t0001	7778	108	26	10	65	2	4	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/1	t0002	7780	78	3	14	45	8	7	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0003	7778	24	1	12	7	3	1	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0004	7780	19	0	7	12	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0005	7778	16	13	3	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0006	7778	12	0	0	12	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0007	7780	8	8	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0008	7780	6	0	5	0	0	1	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0009	7780	5	0	0	5	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0010	7779	3	3	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0011	7778	3	3	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	t0012	7778	3	0	0	3	0	0	copy fasta	FBXW2	chr9	120751974	120798416